Needlman-Wunsch align: A-GACTTTATCAA-ATT--ATAACTGG--GATT-AGATAGAC-AGTCCA---GAAT--AATT--TTAATAATT-CATGTACATGCTT-CA-T----GT----A--TTTTC--CTTGCTT-ACACTTGCCTA ATGA---T-TC--CATTCGAT---T--CCG-TTCA-A-AGACAATTCCATTCGAGTCC-ATTCG---ATGATTCCAT-T-C--GCTTCCATTCGACGTGGAGAGC-TTTCGA---GC--C-CA--TGCATC Hein align (my align): A-GACTTTATCAAATTATAACTGGGATT-AGAT---AGACAG-TCCAGAATAATTTT-AATA-ATTC-ATGTA---CAT--GCTTCATGTATTTTC---CTT-----GCTTAC-ACT---TGCCTA ATGAT----TCC-ATT----C---GATTCCGTTCAAAGACAATTCCA-------TTCGAGTCCATTCGATG-ATTCCATTCGCTTCC---ATT---CGACGTGGAGAGCTTTCGAGCCCATGCATC Hein align (MACSE): A----GACTTTATCAAATTATAACTGGGATTAGATAGACAG-TCC---AGAATAATTTTAATAATT-CAT------GTACATGCTTCATGTATT------TTCCTTGCTTACACTTGCCTA ATGATTCCA--TTCG--ATTC-C------GTTCAAAGACAATTCCATTCGAGTCCATTCGATGATTCCATTCGCTT--CCAT---TCG-ACGTGGAGAGCTTTCGAGCC--CA--TGCATC